Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| PAAD | rs116850092 | chr15:78276200 | A/G | 0 | 173 | 15.43 | 17.4 | 1.03 | KM Plot |
| PAAD | rs116893986 | chr19:18289720 | T/C | 1.96E-12 | 171 | 15.55 | 19.4 | 1.37 | KM Plot |
| PAAD | rs11698443 | chr20:46414801 | T/A | 9.58E-13 | 177 | 15.57 | 13.13 | 1.37 | KM Plot |
| PAAD | rs11700505 | chr21:48086569 | G/A | 4.63E-5 | 178 | 7.47 | 15.62 | 15.43 | KM Plot |
| PAAD | rs117143374 | chr21:40555561 | T/C | 1.13E-6 | 174 | 16.1 | 12.2 | 4.4 | KM Plot |
| PAAD | rs117227130 | chr19:49367959 | A/G | 7.3E-13 | 176 | 16.28 | 12.6 | 1.37 | KM Plot |
| PAAD | rs11723188 | chr4:17128242 | C/A | 0 | 177 | 15.37 | 17.7 | 0.4 | KM Plot |
| PAAD | rs117232835 | chr7:6195427 | G/T | 0 | 170 | 15.4 | 15.5 | 1.03 | KM Plot |
| PAAD | rs11725060 | chr4:2400417 | T/G | 0 | 174 | 0.4 | 16.13 | 15.33 | KM Plot |
| PAAD | rs117364224 | chr11:125666758 | T/C | 3.76E-5 | 176 | 15.55 | 15.13 | 3.9 | KM Plot |
| PAAD | rs11736910 | chr4:82404793 | A/G | 4.98E-6 | 178 | 3.72 | 15.9 | 15.55 | KM Plot |
| PAAD | rs117393962 | chr17:12919868 | G/A | 0.000161 | 177 | 16.07 | 15 | 7.87 | KM Plot |
| PAAD | rs11741137 | chr5:135226137 | C/T | 6.95E-7 | 175 | 15.48 | 17.23 | 3.18 | KM Plot |
| PAAD | rs117466476 | chr11:125607249 | G/A | 3.36E-5 | 177 | 15.57 | 15.13 | 3.9 | KM Plot |
| PAAD | rs11767982 | chr7:12549584 | C/A | 9.96E-8 | 174 | 15.48 | 16.03 | 4.77 | KM Plot |